Computer scientist and biologist who leverages computational methods to study microbial metabolism in environmental metagenomes.
current Post-doctoral Scientist, Helmholtz Institute for Functional Marine Biodiversity at Oldenburg
past Graduate Student, The Biophysical Sciences Program at the University of Chicago
past Fellow, NSF Graduate Research Fellowship Program
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Some contributions are more than code. Inevitably, this manually curated list will be incomplete for almost everyone, but nevertheless, we try to keep track of key contributions made by memebers of the anvi'o commmunity to the platform and its users. Edit these files to help.
anvi-compute-functional-enrichment-across-genomes anvi-compute-functional-enrichment-in-pan anvi-compute-metabolic-enrichment anvi-display-metabolism anvi-estimate-metabolism anvi-migrate anvi-run-hmms anvi-run-kegg-kofams anvi-run-pfams anvi-setup-kegg-data anvi-setup-pfams anvi-setup-user-modules anvi-summarize-blitz anvi-script-estimate-metabolic-independence anvi-script-gen-genomes-file anvi-script-gen-user-module-file
Kinds of write-ups that typically use mock or simple datasets to describe basic concepts and how to accomplish common tasks in anvi'o often with hands-on experience.
Solutions or discussions regarding matters that are typically more technical than scientific.
Key insights into specific topics and can be useful to more advanced users and 'omics enthusiasts in general.